Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs959989 chr12:129292708 A/T 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs9676739 chr19:37985189 G/A 1.78E-13 133 46.3 35.03 17.1 KM Plot
TGCT rs9678110 chr2:3489253 G/A 2.2E-5 132 40.57 57.87 25.32 KM Plot
TGCT rs9678830 chr2:3489541 C/T 2.2E-5 132 40.57 57.87 25.32 KM Plot
TGCT rs9678958 chr2:3489385 A/G 2.2E-5 132 40.57 57.87 25.32 KM Plot
TGCT rs9679123 chr2:3489259 T/A 2.2E-5 132 40.57 57.87 25.32 KM Plot
TGCT rs9718411 chr7:76525943 C/T 0.000122 127 40.08 42.27 10.62 KM Plot
TGCT rs975771 chr8:116898903 A/T 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs976304 chr8:116900774 G/T 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs976305 chr8:116900786 A/G 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs976306 chr8:116901137 C/A 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs9790224 chr3:172459863 C/G 9.67E-5 131 25.8 36.97 45.47 KM Plot
TGCT rs9804754 chr12:107083031 G/A 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs9815026 chr3:172440326 C/A 8.19E-5 134 25.33 37.42 45.1 KM Plot
TGCT rs9834871 chr3:172440269 G/T 1.49E-5 134 45.1 37.3 25.57 KM Plot